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Section Navigation

User Documentation

  • Introduction
  • What’s New in Avogadro 2
  • Getting Started
  • Building Molecules
    • Importing Molecules by Name
    • Importing from the Protein Data Bank (PDB)
    • Insert Molecular Fragments
    • Building with SMILES
    • Building DNA or RNA
    • Building Peptides
  • Tools
  • Display Types
  • Optimizing Geometry
  • Tutorials
  • Settings
  • Guide
  • Building Molecules

Building Molecules#

A key task in Avogadro is building and editing molecules for visualization and simulations.

Building Molecules

  • Importing Molecules by Name
  • Importing from the Protein Data Bank (PDB)
    • Importing Directly
    • Reading a Downloaded PDB file
  • Insert Molecular Fragments
  • Building with SMILES
  • Building DNA or RNA
  • Building Peptides

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Importing Molecules by Name

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